A substance is a large (macroscopic) collection of molecules. An element is a special case when all the molecules consist of one type of atom; otherwise it is a compound.
Molecules are only stable within a certain range of temperature and pressure and depending on what other molecules are present; otherwise they react into other types.
Generally speaking, there are three broad classes of compounds, depending on whether the atoms are prevalently electropositive, electronegative, or mixed. Electronegativity is how much an atom attracts electrons towards itself in a covalent bond.
E.P.
E.N
E.P.
metals
ionic
E.N.
covalent
Periodic table of electronegativity
Exceptions: Hydrogen is in a class of its own: it forms a metal, covalent bonds and both positive and negative ions. Beryllium is often classified as electropositive but mostly forms covalent bonds.
The compounds shown in these pages are only the simplest, there are, of course, innumerably more complicated molecules.
The Simplest Molecules
The simplest molecules are the atoms of the 'noble' elements He, Ne, Ar,...; they have very low melting and boiling points (mp, bp), and density; He is a superfluid at 2.2 K with no heat capacity.
The next-simplest combinations of the molecule-forming atoms are:
Note about the colors: O is not red, N blue..., atoms only "feel" each other's electric fields; but colors allow us to recognize the atoms.
The strongest molecules of all are CO and nitrogenN2, with its triple bond, hence it is very inert, even at 3000K. The next strongest simple molecules are HF, CO2, and H2O.
HydrogenH2 has the lightest molecule of all, hence has very low melting and boiling points.
Hydrogen fluorideH-F has a bond that is almost ionic but being so small it doesn't separate so easily (pK=3.2).
FluorineF2 has a very weak and easily broken bond. Only a few fluorine compounds are stable; most are reactive, even at low temperatures: FCN, HOF, F2CO, NHF2 .... produce HF, often explosively or when water is added (X-F + H2O → X-OH + HF); for example,
F2 + H2O → 2HF + O,
2F2 + CH4 → 4HF + C,
FNO + H2O → HF + HNO2
Oxygen difluoride has very weak bonds; with a little extra energy, it decomposes into O2 and F2. Similarly, NF3 has weak bonds, liable to lose its fluorine atoms.
Water has strong intermolecular forces because of its polarity (hydrogen bonding) and geometry. It has the highest boiling point among the simple molecules and it forms aggregates of about 40 molecules fluctuating at 10 GHz when a cold liquid. One in 500 million molecules ionizes as H3O+ and OH-, each 'hydrated' by four other water molecules (pK=15.7).
OxygenO2 has a double bond and is easily polarized. The two outer electrons in the bond have the same spin, making the molecule magnetic. OzoneO3 is a less stable form of oxygen; the extra O is held weakly by a coordinate bond.
AmmoniaNH3 oscillates (by flipping) at 10GHz. It is not as stable as the other molecules: in water, it converts to NH4+ + OH- (pK=4.8).
NO2 has fairly weak N-O bonds and is not very stable since it has an unfilled orbital; at higher temperatures, it tends to decompose as 2NO2 → N2O4 → N2O2 + O2 → 2NO + O2 → N2 + O2. Other possible compounds, such as N2O and N2O3 are less stable. N2O5 often breaks up as NO2 + NO3
Carbon dioxideCO2 has strong double polar bonds. Carbon monoxideCO is even more stable than N2, but reverts to CO2 if given the chance. OCCO splits into 2CO immediately.
The elements just below C, N, O, F in the periodic table have similar chemical properties:
Silicon Phosphorus Sulfur Chlorine
are similar to
Carbon Nitrogen Oxygen Fluorine
They form similar molecules, but because of their bigger size and longer bonds, they are less stable and more likely to join up into larger molecules (with higher mp ...) instead of forming double or triple bonds.
The non-polar molecules CCl4 (or SiCl4), NCl3 (or PCl3), and OCl2 (or SCl2) are respectively similar to CF4, NF3, and OF2, but they are heavier (so have a higher m.p., b.p.).
Like CF4, the carbon-fluorides are very stable, non-polar and unreactive; but bonds with the larger Br or I are very weak.
SilaneSiH4 is similar to methane CH4, being non-polar, but weaker and more reactive.
NCl3 is very explosive: 2NCl3 → N2 + 3Cl2, NCl3 + 3H2O → NH3 + 3ClOH. PCl3 is slightly more stable but still reacts with H2O and O2; it can accept extra chlorine atoms to form PCl5 (but reverts to PCl3 when hot).
The polar molecules PH3, HCl, and H2S are similar to, but less polar than, NH3, HF, and H2O; they have weaker bonds, have a lower m.p./b.p., and are more reactive.
PhosphinePH3 is similar to ammonia (base pK=5) but is not as polar or stable.
H2S is similar to water, but is hardly polar; in water some break up as H3O++HS- (pK=7), even H2+S
The molecules O=C=S and S=C=S are similar to CO2 but less stable.
The presence of more orbitals in Si, P, S allows for novel combinations and larger molecules amongst themselves.
Sulfur takes various cyclic forms, unlike oxygen, most commonly S8 (up to polymers).
S4N4 explodes to 4S + 2N2.
Phosphorus forms molecules ranging from P2 to the solid P4 at room temperature to graphite-like solids. It reacts with water, 4P+3OH-+3H2O → 3H2PO2- + PH3.
The larger P4O6, up to P4O10, are more stable than PO2 at room temperature.
Chlorine's bond is easily broken (2.5eV), ClF is even more reactive.
Hydrochloric acidHCl dissociates more easily than HF, so it is a stronger acid: HCl + H2O → H3O+ + Cl-.
Reactivity of Molecules
In general, molecules are reactive depending on the strength of their bonds and how easily they lose or gain electrons. Weak molecules like F2 or strong molecules that are charged or polar and lose or gain electrons easily, are liable to react. Reactions occur when molecules collide with each other in the correct orientation and with enough energy ("activation energy"). If only the fastest or precisely oriented molecules react, or their concentration is low, then the reaction rate is slower but still occurs. Molecules in solids are obviously less likely to react than liquids and gases because they only collide with their immediate neighbors, especially if covalent.
At low temperatures, most molecules are stable because they do not have enough energy to react; but as the temperature increases, reactions start to occur and only the more stable molecules survive.
Every molecule decomposes or reacts at high enough temperatures. Beyond 4000 K all bonds are broken; in a flame (1500—3000 K) or UV light, bonds are broken and reform all the time. How do the atoms recombine? Most probably as some of the small stable molecules shown previously, first N2, HF, CO, and metal chlorides/oxides, then H2O, HCl, and CO2, finally any excess atoms form an element (O2, H2, Cl2, C, metals ...)
2H2+O2→2H2O2HOF→2HF+O2
Reactions occur only if they result in an increase in entropy. This is mostly accompanied by a release of energy — exothermic; more rare are endothermic reactions that absorb surrounding heat (yet the entropy still increases).
A reaction that gives energy to its molecules (exothermic) has a runaway effect. The extra heat may dissipate, but if enough heat is generated, it raises the temperature substantially. If the reaction occurs at the surface and depends on an inward diffusion of molecules to continue, the result is a flame (e.g., a solid/liquid reacting at its surface), otherwise it produces an explosion as gas is produced in a small volume.
Molecules with a net electric field, such as ions or polar molecules, are more likely to react with molecules of opposite charges that they attract. The most stable compounds are either non-polar small molecules, water, and ionic/covalent solids. Any molecule is as strong as its weakest bond.
Stability also depends on the type of surrounding molecules: In the Earth's atmosphere, stability with respect to oxygen and water is what's important.
If there is a chance that a molecule can dissociate, it will do so, at very low concentrations, because once the two parts separate there is a very low chance of rejoining, especially if the molecule can escape 'forever' (e.g. as a gas in an open container). At higher concentrations an equilibrium is reached between the joined and decomposed forms. The ratio of the forms is measured by a logarithmic scale called pK. A readily dissociated molecule has a low or negative pK value.
At high pressure, large molecules in solids are preferred; at low pressure, small gas molecules that form in a reaction escape, even if the reaction absorbs energy (endothermic).
Reducers and Oxidizers
Molecules can be broadly classified as reducers or oxidizers, depending on whether they have high or low-energy molecular orbitals available and thus liable to give or take electrons.
Acids are solutions with a predominance of H+ (i.e., H3O+ in water; a 'naked' proton is very reactive and immediately becomes part of a covalent bond).
Alkalis or bases are solutions with a preponderance of OH-, e.g., NaOH.
In general, reducers react with oxidizers, especially if they are far apart in the following list. Molecules lose electrons/H to others lower in the list:
So metals are mostly chemically unstable (although they may need heat to activate them): their conduction electrons readily transfer to H+ (acids/water), fluorine/chlorine, or burn in oxygen, e.g., magnesium metal in an acid gives off hydrogen: Mg + 2H+ → Mg2+ + H2 calcium metal slowly reacts in water: Ca + H2O → Ca(OH)2 + H2 sodium burns in oxygen or chlorine: 4Na + O2 → 4Na+ + 2O2- ammonia burns in pure oxygen: 4NH3 + 3O2 → 2N2 + 6H2O nitric oxide annihilates ozone: NO + O3 → NO2 + O2 nitric acid is reduced to nitrogen dioxide by hydrogen sulfide: H2S + 2HNO3 → S + 2NO2 + 2H2O lead sulfide is oxidized to sulfate by hydrogen peroxide: PbS + 4H2O2 → PbSO4 + 4H2O The presence of oxidizers and reducers in the same molecule is usually explosive: e.g., NH4NO2 → N2 + 2H2O
A reaction that ought to occur but doesn't is usually because only the surface reacts forming a layer that protects it.
Metals
When electropositive atoms have no nearby electronegative atoms to give their electrons to, they form metals.
Alkali metal atoms (Na, K) are relatively large, so have a low interatomic attraction and form large soft bcc lattices, hence low mp/bp, density, heat of fusion; their outer electron is very energetic, so reactive and very metallic.
Alkaline metals (Mg, Ca) lose two electrons per atom but less easily than alkalis.
Transition metals: generally have high mp, are dense, hard, ductile, and insoluble in water; are less reactive; their conduction band characteristics are complicated, so their conduction properties vary; although they have two outer s-shell electrons, they have d-shell electrons in reserve for covalent bonding. Fe, Co, Ni are ferromagnetic, Cr is anti-ferromagnetic; W, Ta,... have covalent bonding in addition to being metallic, hence their high mp and strength. Cu, Ag, Au, Pt are much less reactive; Zn, Cd, Hg have an almost empty conduction band, hence are weakly metallic with a low mp; Sn, Pb, Bi have an almost empty conduction band; they can form covalent bonds, e.g., PbCl4.
Mixtures of electropositive atoms form metal alloys: crystals if their atoms are the same size, or amorphous solids if not. Often, they are stronger but more brittle than one-element metals.
Complexes
When transition element atoms lose their outer two s-electrons, they expose their inner shell of d-orbitals, allowing them to make coordinate bonds with up to 6 polar/ionic molecules such as H2O (hydrated), NH3, CN-, NO, or larger, and form complexes. The bonds are weak, and easily dissociate with heat. Charged complexes are limited up to 4±.
Al3+(H2O)6
Al3+, with its higher charge, forms highly polar bonds, effectively lowering its charge concentration. The water in hydrated complexes can react with H2O, OH- or NH3, to form for example, Al(H2O)3(OH)3.
Fe(CN)63-Mg(H2O)5F+
Other molecules may replace some ligands to form mixed complexes.
Cu2+(NH3)4(H2O)2CuCl42-
Cu2+ can only accommodate four large Cl- ions. In water, H2O may replace some or all of the Cl- ligands.
Be has no d-orbitals but is still hydrated by 4 water molecules. Larger metal atoms, such as Pt, cannot form strong coordinate bonds, so they act as good reactive catalysts.
Large Covalent Solids
When atoms combine together by large rigid networks of covalent bonds, the result is a large covalent solid which is extremely strong and stable. Large covalent solids are exceptionally strong, hard, and durable due to the presence of a vast number of covalent bonds. They typically have high melting points, making them resistant to heat and pressure and often do not conduct heat and electricity well.
Carbon's four outer electrons allow it to repeatedly form covalent bonds with other carbon atoms to form a covalent solid; there is a wide variety of carbon forms:
Graphite
Graphite consists of layers which can slip; electrons in between the layers make it a conductor in those directions.
Diamond
Diamond is the high-density form with atoms repeating in a tetrahedral arrangement; it is practically the hardest and strongest compound known, with a very high melting point (>3000K).
C60 "buckyball"
Fullerenes are smaller molecules with variable number of C atoms (may contain other molecules trapped inside).
Graphene
Graphene is a sheet of C arranged in a hexagonal lattice; here it is folded to form part of a "nanotube".
Pure silicon, and SiO2 (silica), SiC (carborundum), C3N4, B4C, BN also form diamond-like covalent crystals, and almost as hard.
Metalloids
Metalloids are a group of elements in between the metals and nonmetals. They can form covalent bonds but can also lose electrons like metals; their properties range from conductors with a semi-metallic look and fairly high m.p., to semi-conductors, to insulators.
Ge, Si form unreactive covalent solids which are semiconducting if doped with other atoms. As, Sb, Bi have an almost empty conduction band. III-V alloys form semiconducting zincblende crystals; II-VI alloys form semiconducting crystals.
Simple Ionic Compounds
Electronegative atoms can accept electrons until all their outer orbitals are filled up.
Halides
Metals react readily with fluorine and chlorine to produce ionic solids:
Fluorides F-: ionic, e.g., cryoliteNa3AlF6, or part of complexes.
ChloridesCl-: ionic, mostly cubic solids, e.g., with Na+ (halite, "common salt"), K+ (sylvite) especially mixed as (K+,Mg2+) (carnallite), and with Ca2+ (fluorite); but LiCl forms covalent bonds.
Aluminium chloride is covalent as a gas Al2Cl6 or AlCl3 but is ionic in water. Ionic solids with complexes like (SnCl6)2- are also possible.
Hydrides H-
Hydrogen usually loses its electron, but it can also accept an electron, H-, from strongly electropositive atoms like Na, Ca, or Mg to form ionic solids.
However its hold on its extra electron is tenuous, and it easily gives it off, acting as a strong reducer, especially with acids, water, or oxygen:
X+H- + H+ → X+ + H2
X+H- + H2O → X+ + H2 + OH-
2X+H- + O2 → X+2O2- + H2O
Hydrides of Al, Be, B are covalent: e.g., BeH2 is a polymer; boron hydrides are in the shape of octahedra, dodecahedra etc. (borane B2H6, up to B6H10, or more, are mostly unstable.) BH4 borohydride
Oxides O2-
Electrons transfer readily from metals to O2 to give the oxide, at least on their surface. Common oxides are cubic ionic lattices, e.g., with Li+, Na+, Mg2+ (periclase), Ca2+ (lime), Fe2+ possibly with Ti4+ (ilmenite), as well as Ni2+, Co2+, Mn2+, Cu+ (cuprite).
Spinels are 1:2 mixtures of Mg2+, Fe2+, Mn2+, Zn2+ and Al3+, Fe3+, Cr3+ (magnetite, chromite...)
Na+ and K+ also form oxides of O22-, or O2-.
Fe3+ (hematite) has a different ionic crystal structure; the same as the oxide of Al3+ (corundum) which is a very hard covalent solid.
Ti4+ (rutile), Sn4+ (cassiterite), Mn4+ (pyrolusite), have a different lattice; also Pb4+Cr4+ (crocoite).
Most oxides are insoluble in water (except Na2O) because of the strong ionic attraction. But they react with acids, and in solution, these anions are often very reactive.
Peroxides with O2- produce hydrogen peroxide; its -O-O- bond is liable to break and produce the reactive radicals OH.
Hydroxides OH-
Hydroxides are less tightly held than the oxides, so they are slightly more soluble because of their lesser charge; examples include Na+ (caustic soda), Ca2+, Mg2+ (brucite); most are hydrated complexes, e.g., Cu2+(H2O)4(OH-)2 (insoluble when uncharged); some are mixed with other anions, e.g., FeO OH (limonite), Cu2(OH)3Cl (atacamite). Some metals absorb OH- to become complexes, e.g., Al(OH)4-, Zn(OH)4-, Sn(OH)6-
Heating solid hydroxides gives back the oxides: 2OH- → H2O + O2-
Hydroxides react with acids: OH- + H3O+ → 2H2O.
Al(OH)3 (bauxite) forms crystals made up of sheets; it reacts with both acids and OH-: Al(OH)3 + OH- → Al(OH)4-
Sulfides S2-
Like O2-, sulfides form mostly cubic ionic solids, e.g. with Zn2+ (sphalerite/wurtzite), Mo4+ (molybdenite), Cd2+ ('cadmium yellow'), Pb2+ (galena; semiconducts), sulfosalts (Cu, Ag, Pb)(As, Sb, Bi) such as (Cu,As)2+ (enargite), Hg2+ (cinnabar).
ThiolsSH- are like the hydroxides; heating gives the sulfides.
DisulfidesS22-, e.g., with Fe2+ (pyrite), (Ni,Co,Fe)2+ (ullmannite)
Sulfides react with acids to form thiols, then hydrogen sulfide: S2- + H3O+ → HS- + H2O HS- + H2O → H2S + H2O Sulfides react slowly with water or oxygen to give oxides (or sulfates). S2- + H2O → O2- + H2S S2- + 2O2 → SO2 + 2O-
Nitrides N3-
Nitride anions join mostly with highly charged Mg2+, Ca2+; but AlN is a hard ionic/covalent solid.
Nitrides react with acids (and water) to give ammonia NH3.
Phosphides are similar to nitrides.
Nitrites NO2-
Nitrates NO3-
On heating, nitrates give nitrite and O2 but it can also explode giving off N2, O2, and oxides, e.g., ammonium nitrate: NH4NO3 → N2 + 2H2O + O.
Nitrates form ionic solids e.g., with Na+ (soda nitre), K+ (nitre), Ca2+.
NO3- is often robbed of one of its oxygens, by sulfur, phosphorus, or carbon, releasing NO2.
Carbide anions are partly covalent, e.g. with Al3+; like the oxides and nitrides, they react with acids and water to give methane CH4.
With Na+ and Ca2+, the carbide ion is C22-, or even C34-, as with Li+ and Mg2+ in order to lessen the charge concentration.
Carbonates CO32-
CO + OH- → HCO2- Carbonates form ionic solids with Na+ (soda), K+ (potash), Ca2+ (calcite), Mg2+ (magnesite), (Ca,Mg)2+ (dolomite), CuCO3.Cu(OH)2 (malachite), ZnCO3 (calamine).
Carbonates are liable to give out carbon dioxide, e.g., CO32- + SO2 → SO32- + CO2 They react with acids: CO32- + 2H3O+ → CO2 + 3H2O
Cyanates OCN-
Cyanic acidO-C≡N-H is unstable in water, giving off CO2 + NH3.
Chlorates
Perchlorate is stable because of its symmetry. But in all the chlorates, the O are held weakly by Cl, so they are highly reactive oxidizers (e.g., give out O2), even explosive with a reducer. Chlorine in water produces hypochlorite: Cl2 + H2O → ClOH + HCl. Which anion predominates depends on the thermodynamic conditions, including concentrations of other molecules such as H+.
Sulfites SO3-
Sulfites can be oxidized to sulfates: 2SO32- + O2 → 2SO42-
Sulfates SO42-
Sulfur trioxide eagerly absorbs water to become the more stable symmetric sulfate molecule.
Sulfates form ionic solids, often hydrated, with mixtures (polyhalite) of Na+ (mirabilite), Mg2+ (epsomite), and Ca2+ (gypsum), as well as Al3+, Fe2+ (melanterite), Cu2+ (chalcanthite, antlerite, brochantite), Pb2+ (anglesite), Ba2+ (barite), KAl3(SO4)2(OH)6 (alunite).
Sulfates are stable, unreactive, and mostly insoluble; but they can be reduced to sulfites;
PyrosulfateS2O72- is a powerful oxidizer, readily giving SO3 and sulfate.
SO3 solidifies as a polymer ...-SO2-O-SO2-O-....
Phosphites HPO32-
Phosphites are liable to give off PH3 and phosphate, but is more stable than PCl3. They can be oxidized to phosphate: 4HPO32- + HSO4- → 4HPO42- + HS-.
HypophosphiteH2PO2-
Phosphates PO33-
Phosphates can form insoluble ionic solids, often with OH-, e.g., Al3(PO4)2(OH)3 (wavellite), Ca5(PO4)3(OH,Cl) (apatite), CuAl6(PO4)4(OH)8 (turquoise). They are able to either accept or release H+ depending on the pH.
PhosphoranesPO55- are reactive oxidizers.
ArsenatesAsO43- are similar to phosphates, but heavier.
Others Si(OH)2O-
Silicic acid
BorateBO33- Borinic acid accepts an OH- from water.
AluminateAlO33- is similar to borate.
TungstenateWO42- with, for example, Ca2+ (scheelite), (Fe,Mn)2+ (wolframite), and MolybdatesMoO42- with, for example, Pb2+ (wulfenite), are similar.
ChromatesCrO42-, manganates MnO42-, and permanganates MnO4- are reactive, giving off the oxide + H2O.
When given the chance, these anions join up so that they reduce the charge concentration: XO42- + 2H+ → X2O72- + H2O ... or structures as complex as the silicates.
Salts
Salts are ionic compounds that do not react with water.
The various salts have different solubilities at room temperature, depending on the balance between lattice energy and hydration energy. In general, smaller highly-charged ions have tightly-held lattices but are also more hydrated, e.g., MgO is tighter than Mg(OH)2, Ca2+ is more hydrated than Na+ which is more hydrated than the larger K+.
Mixing two salts together, or with an acid, causes precipitation when a cation and an anion form an insoluble solid. For example,
Na2CO3 + Cu(NO3)2 → CuCO3 (precipitates) + 2NaNO3 (What is happening is simply Cu2+ + CO32- → CuCO3 (solid)
Such distinct changes are used to test whether certain cations or anions are present in a solution.
Covalent Molecules
H and F, Cl, ..., with valency 1, can only occupy the ends of a molecule, so the backbone of a large molecule usually consists of C, N, O.
The various combinations of C, N, O molecules are:
Hydrocarbons
Hydrocarbons are molecules that consist of only C and H.
Alkanes
Alkanes are chains of carbon with single bonds to hydrogen atoms. They are all non-polar.
As chains get longer, they are more massive, have more inter-molecular forces and can get entangled, therefore viscous with higher m.p. and b.p. At >800K, alkanes 'crack', giving off H2 and resulting in alkenes.
The larger molecules can be branched (they occupy more space so have a lower density than straight-chained) ...
... or have loops (cycloalkanes). The loops can, in principle, be quite large, even linked.
Teflon is like polythene with F instead of H
PVC is similar but with Cl replacing 1/4 of H
Polypropylene consists of long chains with CH3 side-branches
Silanes have Si instead of C, but they are weaker because the larger size of Si makes the Si-Si bond weaker and more easily attacked by H2O to give the more stable SiO2.
Alkenes
Alkenes have chains with rigid C=C bonds.
Butadiene has stable alternating double/single bonds. ... when repeated it forms polybutadiene (soft rubber). Other rubbers and terpenes are similar: isoprene has CH3 instead of 1/4 of H, neoprene has Cl.
Due to its thickness, the negative double bond of alkenes is exposed to reactions by oxidizers which grab their electrons to form single bonds; for example, ethylene + chlorine, C2H4 + Cl2 → CH2ClCH2Cl. They can also join with each other to form poly-alkanes.
Cycloalkenes: More complicated rings akin to terpenoids:
Aromatics
Arenes are alkenes that form a six-cycle: the double bond wavefunctions get smeared out in a ring. Benzene is particularly stable among the cycloalkenes because of its symmetry.
Toluene is benzene with a CH3 branch: Xylene has two branches with CH3.
Styrene has benzene linked to butadiene. It can polymerise to polystyrene.
Naphthalene is two joined arene rings.
Alkynes
Alkynes have a triple C≡C bond. They are more reactive than alkenes.
The chains can grow up to polyalkynes.
Nitrogen compounds
Double-nitrogen molecules are usually unstable, even explosive (warning!), as they easily convert to N2. For example, diazeneN2H2 (→ N2 + H2): Only N2F2 is stable.
Nitrous oxide N2O (N≡N-O ↔ N=N=O) decomposes to N2 + O.
Azo compounds
Azos have a -N=N- structure. Their double bond has absorption spectrum in the visible light, many having a vibrant color. They can be reduced to amines.
Azines have a =N-N= structure. Like azos, their double bonds give them color and can react by oxidising other compounds.
Hydrazines have -(N-NH2)-. HydrazineN2H4 itself is unstable N2H4 → N2 + 2H2, and is a strong reducer, e.g., N2H4 + O2 → N2 + 2H2O.
Azides have a -N=N=N structure. They are generally unstable, -N3 → -N + N2, 2HN → H2 + N2.
Triazenes have a =N-N=N- structure. These colored molecules are liable to lose the end nitrogen and be left with +N≡N-
Amines
Amines have the functional group -NH2. Their negative charge attracts positive ions. Amines are reducing bases, e.g., they absorb the H+ of acids to give -NH3+ or NH4+; e.g., CH3NH2 + HNO2 → CH3OH + N2 + H2O.
Phosphines are similar to amines with P replacing N.
Imines
Imines have the reactive double bond C=N-. Oximes are imines with a hydroxyl or oxygen at the end, C=N-OH. Amidines have -(NH2)C=NH
Nitriles
Nitriles have a polar cyano functional group -C≡N. However, they do not readily give off cyanide CN-. Their triple bond makes them reactive: with acids or alkali to form aldehydes: -CN + H3+ + H2O → -COOH + NH4+; -CN + OH- + H2O → -COO- + NH3.Isocyanides have the structure -C-N+≡C-.
Nitrosyls
Nitro compounds, with -NO2 tend to give NO- + H2O. They form by the action of nitric acid H3O+ + NO3- on organic compounds. They can be reduced to amines.
Nitrosyls have the end-group -N=O. Like the nitros, the O atom attracts electrons, making the N slightly positive. The simplest is nitroxyl but it decomposes: 2HNO → H2N2O2 → N2O + H2O.
Oxygen compounds
Ethers
Ethers have the structure -O-. They are very stable and mildly polar.
Epoxides have a C-O-C ring. Polyethers have a chain of ···-C-O-C-O-···.
Sulfides have -S-. Disulfides are like peroxides, -S-S-.
Alcohols
Alcohols have an endgroup -OH. They are reactive: can lose H+ (acid) or OH- (base), depending on the push/pull of O. Thus they can dehydrate to an alkene, or oxidize to a ketone/aldehyde; e.g., CH3CH2OH + Cl- → CH3CH2Cl + OH-.
Diols or glycols have two -OH groups. Glycerols have three.
C(OH)4 and HC(OH)3 decompose to carbonic (CO(OH)2) and formic acids (HCOOH).
Carbinolamines-C(OH)(NH2) usually dehydrate to imines.
Ethers with plenty of OH groups is called a carbohydrate or sugar.
Thiols, with -SH are similar to alcohols.
Ketones
Ketones have a -(C=O)- structure. The double bond is very polar, with O pulling electrons from the rest of the molecule. They are reactive reducers, easily hydrated to glycol or oxidized to carboyxlate or reduced to an alcohol.
Aldehydes
Aldehydes have a -COH endgroup. Glyceraldehyde is the simplest sugar, soluble because of its multiple OH groups. They can be reduced to an alcohol. They react with amines to give imines: -NH2 + -CO- → -N=C= + H2O
Halide acids-COCl are similar.
Fatty Acids
Carboxylates have a carbonyl -(C=O)-OH endgroup. They are acids: there is a good chance of losing this H. Carboxylates pair up with hydrogen bonding. Longer chains are called fatty acids. Carboxylates can be reduced to an alcohol (-COOH → -CH2OH), or dehydrated to an ether.
Thiocarbonyls with -(C=S)-, and -CSOH are similar.
Esters
Esters have the structure -(C=O)-O-. They can be formed from carboxylic acids with e.g., an alcohol; they are liable to lose its -OX and become a ketone. Polyesters have a repeating chain: ...-X-(CO)O-X-(CO)O-...
Amides
Amides have a -(C=O)-NH2 endgroup. They are weakly basic because N loses its extra electrons to C=O. When heated amides gives a nitrile and water. They can polymerise as nylons...-(C=O)-(NH)-X-... or as polyurethanes...-O-(C=O)-(NH)-X-....
Thioamides are similar: -(C=S)-NH2, but they react with water to give amides and H2S.
Imides have a double oxygen bond, -(C=O)-N-(C=O)-
Carbamic acid has formula NH2COOH but it decomposes readily to NH3 + CO2.
Amino acids
Amino acids have a -C(COOH)NH2 endgroup, the simplest being glycine.
Amino acids can polymerise to peptides by dehydration: ...-(NH)-(C=O)-X-...
Cyanates
Cyanates have formula -O-C≡N, while isocyanates are -N=C=O.
Thiocyanates are similar but with sulfur: -S-C≡N
Heterocyclic compounds
Cyclic molecules of C can contain N or O. Small mixed cycles are strained and hence unstable, e.g., epoxides. The most stable cycles are pentagonal or hexagonal, but even so are not as stable as benzene.
Furan, pyridine, ... are basic because of the negative charges about the O and N.
Cycles may be adjacent to each other:
Sulfur compounds
Sulfoxides-(S=O)-; they react with OH- to give out SO2. Sulfones have -(SO2)-Sulfonic acids have -(SO3)-Sulfonic esters have -O-(SO2)-Sulfites have -O-(SO)-O-
Silicates
Quartz (glass) is very hard, transparent (polarizes light), very unreactive but absorbs OH- to yield SiO32- ions.
Stishovite is a denser form (at high pressure).
Olivines
Olivines are ionic solids consisting of a matrix of SiO44- with for example Mg2+ (forsterite, monticellite when mixed with Ca2+), Fe2+ (fayalite, kirschsteinite when with Ca2+ ), Na+.
Garnets are similar but have mixtures of X2+ (Mg2+, Ca2+...) with Y3+ (Al3+, Fe3+,...)
Pyroxenes
Pyroxenes are covalent strands of SiO32- with, for example, Mg2+ (enstatite, diopside when with Ca2+), Fe2+ (ferrosilite, hedenbergite when with Ca2+); AlO42- tetrahedra may be present, e.g., jadeite.
Amphiboles
Amphiboles are hard ionic strands of Si4O116-, e.g., hornblendes.
Micas
Micas are sheets of Si2O52-, e.g., with Mg2+ (biotite).
Al often replaces some Si, in which case extra anions must balance the charge, e.g., KAl2(OH)2AlSi3O10 (muscovite).
Clays
Clays are sheets of Si2O3(OH)2 interlaced with octahedra of O2- and OH- with, for example, Al3+ (kaolinite), Mg2+ (smectite and serpentine), K+ (illite), (Mg,Fe)2+ (chlorite), Al3+(Mg,Fe)2+ (montmorillonite). They are fairly porous absorbing water, and exchanging cations and anions; dehydration changes them to spinel oxides; react with alkali; slightly soluble in acidic water.
Feldspars
Feldspars are a covalent matrix of AlSi3O8- (1Al:3Si) balanced by a mixture of Na+ (albite) and K+ (orthoclase).
Anorthite is a matrix of Al2Si2O82- with Ca2+.
Feldspathoids: when the ratio of Al to Si is 1:2 (AlSi2O6-) or 1:1 (AlSiO4-), the crystal structure is more complicated, e.g., with K+ (leucite), Na+ (nephelite). As the O is more ionic, it is more easily attacked by acids.
Zeolites are a porous matrix of tetrahedra of Si and Al- with channels 0.4 — 0.8 nm wide.